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«Joshua Frederick Coulcher UCL Submitted for the Degree of Doctor of Philosophy September 2011 Declaration I, Joshua Frederick Coulcher, confirm that ...»

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Gutjahr, T., Frei, E. and Noll, M. (1993) 'Complex regulation of early paired expression:

initial activation by gap genes and pattern modulation by pair-rule genes', Development 117(2): 609-23.

Haas, M. S., Brown, S. J. and Beeman, R. W. (2001) 'Homeotic evidence for the appendicular origin of the labrum in Tribolium castaneum', Dev Genes Evol 211(2): 96Hao, I., Green, R. B., Dunaevsky, O., Lengyel, J. A. and Rauskolb, C. (2003) 'The oddskipped family of zinc finger genes promotes Drosophila leg segmentation', Dev Biol 263(2): 282-95.

Hertel, J., Lindemeyer, M., Missal, K., Fried, C., Tanzer, A., Flamm, C., Hofacker, I. L. and Stadler, P. F. (2006) 'The expansion of the metazoan microRNA repertoire', BMC genomics 7: 25.

Holldobler, B. and Wilson, E. O. (1994) Journey to the ants: A Story of Scientific Exploration, Cambridge. London.: Belknap Press of Harvard University Press.

Hughes, C. L. and Kaufman, T. C. (2000) 'RNAi analysis of Deformed, proboscipedia and Sex combs reduced in the milkweed bug Oncopeltus fasciatus: novel roles for Hox genes in the hemipteran head', Development 127(17): 3683-94.

Hughes, C. L. and Kaufman, T. C. (2002a) 'Hox genes and the evolution of the arthropod body plan', Evol Dev 4(6): 459-99.

Hughes, C. L. and Kaufman, T. C. (2002b) 'Exploring the myriapod body plan:

expression patterns of the ten Hox genes in a centipede', Development 129(5): 1225Hughes, C. L., Liu, P. Z. and Kaufman, T. C. (2004) 'Expression patterns of the rogue Hox genes Hox3/zen and fushi tarazu in the apterygote insect Thermobia domestica', Evol Dev 6(6): 393-401.

Hwang, U. W., Friedrich, M., Tautz, D., Park, C. J. and Kim, W. (2001) 'Mitochondrial protein phylogeny joins myriapods with chelicerates', Nature 413(6852): 154-7.

Inoue, Y., Mito, T., Miyawaki, K., Matsushima, K., Shinmyo, Y., Heanue, T. A., Mardon, G., Ohuchi, H. and Noji, S. (2002) 'Correlation of expression patterns of homothorax, dachshund, and Distal-less with the proximodistal segmentation of the cricket leg bud', Mech Dev 113(2): 141-8.

Itoh, K., Chiba, T., Takahashi, S., Ishii, T., Igarashi, K., Katoh, Y., Oyake, T., Hayashi, N., Satoh, K., Hatayama, I. et al. (1997) 'An Nrf2/small Maf heterodimer mediates the induction of phase II detoxifying enzyme genes through antioxidant response elements', Biochem Biophys Res Commun 236(2): 313-22.

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Jager, M., Murienne, J., Clabaut, C., Deutsch, J., Le Guyader, H. and Manuel, M. (2006) 'Homology of arthropod anterior appendages revealed by Hox gene expression in a sea spider', Nature 441(7092): 506-8.

Janssen, R. (2004) Untersuchengen zur molekularen Grundlage der Segmentbildung im Saftkugler Glomeris marginata (Myriapoda: Diplopoda) MathematischNaturwissenschaftlichen Fakultat, vol. PhD. Koln: University of Koln.

Janssen, R., Budd, G. E. and Damen, W. G. 'Gene expression suggests conserved mechanisms patterning the heads of insects and myriapods', Dev Biol 357(1): 64-72 Janssen, R. and Damen, W. G. (2006) 'The ten Hox genes of the millipede Glomeris marginata', Dev Genes Evol 216(7-8): 451-65.

Janssen, R., Eriksson, B. J., Budd, G. E., Akam, M. and Prpic, N. -M. (2010) 'Gene expression patterns in an onychophoran reveal that regionalization predates limb segmentation in pan-arthropods', Evol Dev 12(4): 363-72.

Jaw, T. J., You, L. R., Knoepfler, P. S., Yao, L. C., Pai, C. Y., Tang, C. Y., Chang, L. P., Berthelsen, J., Blasi, F., Kamps, M. P. et al. (2000) 'Direct interaction of two homeoproteins, homothorax and extradenticle, is essential for EXD nuclear localization and function', Mech Dev 91(1-2): 279-91.

Jenner, R. A. (2006) 'Unburdening evo-devo: ancestral attractions, model organisms, and basal baloney', Dev genes evol 216(7-8): 385-94.

Jenner, R. A. (2010) 'Higher-level crustacean phylogeny: consensus and conflicting hypotheses', Arthropod Struct Dev. 39(2-3): 143-53.

Jockusch, E. L., Williams, T. A. and Nagy, L. M. (2004) 'The evolution of patterning of serially homologous appendages in insects', Dev Genes Evol 214(7): 324-38.

Joulia, L., Bourbon, H. M. and Cribbs, D. L. (2005) 'Homeotic proboscipedia function modulates hedgehog-mediated organizer activity to pattern adult Drosophila mouthparts', Dev Biol 278(2): 496-510.

Joulia, L., Deutsch, J., Bourbon, H. M. and Cribbs, D. L. (2006) 'The specification of a highly derived arthropod appendage, the Drosophila labial palps, requires the joint action of selectors and signaling pathways', Dev Genes Evol 216(7-8): 431-42.

Jurgens, G., Lehmann, R., Schardin, M. and Nusslein-Volhard, C. (1986) 'Segmental organisation of the head in the embryo of Drosophila melanogaster: A blastoderm fate map of the cuticle structures of the larval head', Roux's Arch Dev Biol 1986: 359-377.

Kato, Y., Shiga, Y., Kobayashi, K., Tokishita, S., Yamagata, H., Iguchi, T. and Watanabe, H. (2011) 'Development of an RNA interference method in the cladoceran crustacean Daphnia magna', Dev Genes Evol 220(11-12): 337-45.

Khila, A. and Grbic, M. (2007) 'Gene silencing in the spider mite Tetranychus urticae:

dsRNA and siRNA parental silencing of the Distal-less gene', Dev Genes Evol 217(3):


Kimm, M. A. and Prpic, N. -M. (2006) 'Formation of the arthropod labrum by fusion of paired and rotated limb-bud-like primordia ', Zoomorphology 125(3): 147-155.

Kobayashi, A., Ito, E., Toki, T., Kogame, K., Takahashi, S., Igarashi, K., Hayashi, N. and Yamamoto, M. (1999) 'Molecular cloning and functional characterization of a new Cap'n' collar family transcription factor Nrf3', J Biol Chem 274(10): 6443-52.

Kojima, T. (2004) 'The mechanism of Drosophila leg development along the proximodistal axis', Dev Growth Differ 46(2): 115-29.

Kokubo, H., Ueno, K., Amanai, K. and Suzuki, Y. (1997) 'Involvement of the Bombyx Scr gene in development of the embryonic silk gland', Dev Biol 186(1): 46-57.

Kosman, D., Mizutani, C. M., Lemons, D., Cox, W. G., McGinnis, W. and Bier, E.

(2004) 'Multiplex detection of RNA expression in Drosophila embryos', Science 305(5685):


Kraus, O. (2001) “Myriapoda” and the ancestry of the Hexapoda. Annales de la Société Entomologique de France 37, 105-127 Kukalova-Peck, J. (1998) Arthropod Phylogeny and 'basal' morphological structures. in R. A. Fortey and R. H. Thomas (eds.) Arthropod Relationships. London. Weinheim. New York. Tokyo. Melbourne. Madras: Chapman and Hall.

Kusche, K. and Burmester, T. (2001) 'Diplopod hemocyanin sequence and the phylogenetic position of the Myriapoda', Mol Biol Evol 18(8): 1566-73.

Li, X., Murre, C. and McGinnis, W. (1999) 'Activity regulation of a Hox protein and a role for the homeodomain in inhibiting transcriptional activation', EMBO J 18(1): 198-211.

Liu, Y., Maas, A. and Waloszek, D. (2010) 'Early embryonic development of the head region of Gryllus assimilis Fabricius, 1775 (Orthoptera, Insecta)', Arthropod Struct Dev 39(5): 382-95.

Liubicich, D. M., Serano, J. M., Pavlopoulos, A., Kontarakis, Z., Protas, M. E., Kwan, E., Chatterjee, S., Tran, K. D., Averof, M. and Patel, N. H. (2009) 'Knockdown of Parhyale Ultrabithorax recapitulates evolutionary changes in crustacean appendage morphology', Proc Natl Acad Sci U S A 106(33): 13892-6.

Maas, A., Braun, A., Dong Xiping, Donoghue, P., Müller, K. J., Olempska, E., Repetski, J.

E., Siveter, D. J., Stein, M. and Waloszek, D. (2006) 'The ‘Orsten’ – more than a

Cambrian Konservat-Lagerstätte yielding exceptional preservation.', Palaeoworld 15:


Machida, R. (2000) 'Serial homology of the mandible and maxilla in the jumping bristletail Pedetontus unimaculatus Machida, based on external embryology (Hexapoda: Archaeognatha, Machilidae)', J Morphol 245(1): 19-28.

Mahaffey, J. W., Diederich, R. J. and Kaufman, T. C. (1989) 'Novel patterns of homeotic protein accumulation in the head of the Drosophila embryo', Development 105(1): 167Mallatt, J. M., Garey, J. R. and Shultz, J. W. (2004) 'Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin', Mol Phylogenet Evol 31(1): 178-91.

Mallatt, J.M. and Giribet, G. (2006) 'Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch', Mol Phylogenet Evol 40(3): 772-94.

Manton, S. M. (1964) 'Mandibular mechanisms and the evolution of arthropods.', Phil Trans R Soc Lond B 247: 1-183.

Manton, S. M. (1977) The Arthropods: Habits, Functional Morphology and Evolution, Oxford: Clarendon.

Mardon, G., Solomon, N. M. and Rubin, G. M. (1994) 'dachshund encodes a nuclear protein required for normal eye and leg development in Drosophila', Development 120(12): 3473-86.

Mayer, G. and Whitington, P. (2009) 'Velvet worm development links myriapods with chelicerates', Proc Biol Sci. 276 (1673): 3571-9 McGinnis, N., Ragnhildstveit, E., Veraksa, A. and McGinnis, W. (1998) 'A cap 'n' collar

protein isoform contains a selective Hox repressor function', Development 125(22):


McGregor, A. P., Hilbrant, M., Pechmann, M., Schwager, E. E., Prpic, N. -M. and Damen, W. G. (2008) 'Cupiennius salei and Achaearanea tepidariorum: Spider models for investigating evolution and development', Bioessays 30(5): 487-98.

McKay, D. J., Estella, C. and Mann, R. S. (2009) 'The origins of the Drosophila leg

revealed by the cis-regulatory architecture of the Distalless gene', Development 136(1):


Merrill, V. K., Turner, F. R. and Kaufman, T. C. (1987) 'A genetic and developmental analysis of mutations in the Deformed locus in Drosophila melanogaster', Dev Biol 122(2): 379-95.

Misra, J. R., Horner, M. A., Lam, G. and Thummel, C. S. (2011) 'Transcriptional regulation of xenobiotic detoxification in Drosophila', Genes Dev 25: 1796-1806 Mito, T., Ronco, M., Uda, T., Nakamura, T., Ohuchi, H. and Noji, S. (2008) 'Divergent and conserved roles of extradenticle in body segmentation and appendage formation, respectively, in the cricket Gryllus bimaculatus', Dev Biol 313(1): 67-79.

Mittmann, B. and Scholtz, G. (2001) 'Distal-less expression in embryos of Limulus polyphemus (Chelicerata, Xiphosura) and Lepisma saccharina (Insecta, Zygentoma) suggests a role in the development of mechanoreceptors, chemoreceptors, and the CNS', Dev Genes Evol 211(5): 232-43.

Mohler, J. (1993) 'Genetic regulation of CNC expression in the pharyngeal primordia of Drosophila blastoderm embryos', Roux's Arch Dev Biol 202: 214-223.

Mohler, J., Mahaffey, J., Deutsch, E. and Vani, K. (1995) 'Control of Drosophila head segment identity by the bZIP homeotic gene cnc', Development 121(1): 237-47.

Mohler, J., Vani, K., Leung, S. and Epstein, A. (1991) 'Segmentally restricted, cephalic

expression of a leucine zipper gene during Drosophila embryogenesis', Mech Dev 34(1):


Moi, P., Chan, K., Asunis, I., Cao, A. and Kan, Y. W. (1994) 'Isolation of NF-E2-related factor 2 (Nrf2), a NF-E2-like basic leucine zipper transcriptional activator that binds to the tandem NF-E2/AP1 repeat of the beta-globin locus control region', Proc Natl Acad Sci U S A 91(21): 9926-30.

Motohashi, H. and Yamamoto, M. (2004) 'Nrf2-Keap1 defines a physiologically important stress response mechanism', Trends Mol Med 10(11): 549-57.

Muller, K. J. and Waloszek, D. (1986) 'Martinssonia elongata gen. et sp. n., a crustacean-like euarthropod from the upper cambrian 'Orsten'', Zoologica Scripta 15(1): 73-92.

Muller, K. M. (1983) 'Crustacea with preserved soft parts from the Upper Cambrian of Sweden', Lethaia 16: 93-109.

Niwa, N., Saitoh, M., Ohuchi, H., Yoshioka, H. and Noji, S. (1997) 'Correlation between Distal-less Expression Patterns and Structures of Appendages in Development of the Two-Spotted Cricket, Gryllus bimaculatus', Zool Sci 14(1): 115-125.

O'Hara, E., Cohen, B., Cohen, S. M. and McGinnis, W. (1993) 'Distal-less is a downstream gene of Deformed required for ventral maxillary identity', Development 117(3): 847-56.

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